CDS

Accession Number TCMCG007C35780
gbkey CDS
Protein Id XP_033128010.1
Location complement(join(3683070..3683271,3683343..3683633,3683706..3684522,3684609..3686670))
Gene LOC103871728
GeneID 103871728
Organism Brassica rapa

Protein

Length 1123aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_033272119.1
Definition phytochrome A [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category K
Description Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
KEGG_ko ko:K12120        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04712        [VIEW IN KEGG]
map04712        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004672        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006468        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007602        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009581        [VIEW IN EMBL-EBI]
GO:0009582        [VIEW IN EMBL-EBI]
GO:0009583        [VIEW IN EMBL-EBI]
GO:0009585        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009606        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009629        [VIEW IN EMBL-EBI]
GO:0009630        [VIEW IN EMBL-EBI]
GO:0009637        [VIEW IN EMBL-EBI]
GO:0009638        [VIEW IN EMBL-EBI]
GO:0009639        [VIEW IN EMBL-EBI]
GO:0009640        [VIEW IN EMBL-EBI]
GO:0009642        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009881        [VIEW IN EMBL-EBI]
GO:0009883        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010017        [VIEW IN EMBL-EBI]
GO:0010018        [VIEW IN EMBL-EBI]
GO:0010114        [VIEW IN EMBL-EBI]
GO:0010161        [VIEW IN EMBL-EBI]
GO:0010201        [VIEW IN EMBL-EBI]
GO:0010203        [VIEW IN EMBL-EBI]
GO:0010218        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016301        [VIEW IN EMBL-EBI]
GO:0016310        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016772        [VIEW IN EMBL-EBI]
GO:0016773        [VIEW IN EMBL-EBI]
GO:0017148        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031516        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032269        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034249        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0038023        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042802        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046685        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051606        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055122        [VIEW IN EMBL-EBI]
GO:0060089        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071214        [VIEW IN EMBL-EBI]
GO:0071478        [VIEW IN EMBL-EBI]
GO:0071482        [VIEW IN EMBL-EBI]
GO:0071489        [VIEW IN EMBL-EBI]
GO:0071490        [VIEW IN EMBL-EBI]
GO:0071491        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0104004        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCAGGTTCTAGGCCGAGCCACTCCTCCGAGGGCTCAAGGCGGTCAAGACACAGCGCTAGGATCATTGCGCAGACCACTGTTGACGCAAAGCTCCACGCTGACTTCGAGGAATCAGGCAGCTGCTTTGATTACTCAACCTCGGTCCGCGTCACCGGACCCGTTGTGGAGAACCAGCCACCAAGGTCTGACAAGGTGACCACCACCTATCTCCATCACATACAGAAGGGAAAACTGATTCAGCCCTTCGGCTGTTTGCTCGCCTTGGACGAAAAGACCTTCAAAGTCATTGCCTACAGCGAGAACGCCGCCGAGCTCTTGACGATGGCGAGTCATGCGGTTCCCAGCGTTGGTGAACAGGGTGCTCTAGGCATAGGAACGGACATAAGGAGCCTCTTCACTGCTCCCAGCGCCTCTGCGTTGCAGAAAGCGCTAGGATTCGGAGACGTCTCGCTCTTGAATCCCATTCTCGTGCATTGCAAGACTTCCGCAAAGCCCTTCTACGCGATCGTGCACAGGGTCACAGGGAGCATCATCGTGGACTTCGAACCTGTGAAGCCTTACGAAGTCCCCATGACGGCTGCTGGTGCTTTGCAATCGTACAAGCTCGCTGCAAAGGCCATCACTAGGCTGCAGTCTTTGCCCAGCGGGAGCATGGAGAGGCTCTGCGACACGATGGTTCAGGAGGTTTTCGAGCTCACGGGGTATGACAGAGTGATGGCTTATAAGTTTCACGACGATGATCACGGAGAGGTTGTCTCCGAGGTTACAAAGCCTGGTCTAGAGCCTTACCTTGGCCTCCATTATCCAGCCACAGACATCCCTCAAGCGGCTCGTTTTCTCTTTATGAAGAACAAGGTTCGGATGATAGTTGATTGCAACGCAAAACATGTGACGGTGCTTCAGGACGAAAAGCTTTCCTCTGATCTCACCTTGTGCGGCTCCACGCTCAGAGCGCCGCACAGCTGCCATCTGCAGTACATGGCCAACATGGATTCTATTGCATCTCTTGTTATGGCGGTTGTGGTAAACGAGGAGGACGGAGAAGGTGACGCCGCCGCACCTGATTCCACCGCCCCTCAGAAGAGGAAGAGGCTGTGGGGATTGGTGGTTTGTCACAACACCACTCCGAGGTTTGTTCCGTTTCCTCTCAGGTACGCCTGCGAGTTTCTAGCGCAAGTGTTTGCGATACACGTCAACAAGGAGGTGGAGCTGGAGAATCAGATCGTGGAGAAGAACATCTTGCGTACGCAGACGCTACTCTGCGATATGCTGATGCGTGATGCTCCCCTGGGAATCGTCTCGCAGAGCCCCAACATAATGGACCTTGTGAAATGCGACGGAGCAGCTCTCTTGTACAAAGACAAGGTATGGAAGCTGGGGATAACTCCGAGCGAGTTCCATCTCCAGGAGATAGCTTCGTGGCTGTGCGAGTACCACACTGACTCAACTGGTCTGAGCACTGATAGCTTGCACGACGCTGGGTTTCCAAGAGCTCTAGCTCTTGGAGACTCGGTCTGCGGAATGGCGGCTGTGAGGATCTCGTCAAAAGACATGATCTTCTGGTTCCGTTCTCACACCGCTGGGGAAGTGAGGTGGGGAGGTGCAAAGCATGATCCAGATGATAGGGATGACGCGAGGAGAATGCACCCGAGGTCTTCCTTCAAGGCTTTTCTTGAAGTGGTCAAGACGAGGAGTTTGCCTTGGAAGGACTATGAGATGGATGCCATACACTCCTTGCAGCTTATTCTGAGGAATGCTTTCAAGGATGGAGAAGCTACTGATGTGAATACGAAGATCATCCACTCGAAGCTGAATGATTTGAAAATTGATGGTATACAAGAGCTAGAAGCTGTCACTAGCGAGATGGTTCGTTTGATCGAGACTGCTACTGTGCCGATATTGGCGGTTGATTCTGATGGATTGGTTAATGGTTGGAACACGAAGATTTCTGAGCTGACTGGTCTTCCGGTTGATGAAGCAATCGGGAAGCATCTACTCACACTTGTTGAAGATTCTTCAGTGGAAATCGTTAAGAGGATGTTAGAGAATGCATTAGAAGGAACTGAGGAGCAGAATGTCCAATTTGAGATCAAGACGCATCTGTCAAGAGCTGACGCTGGACCAATAAGTCTAGTGGTAAACGCATGCGCAAGTAGAGACCTCCACGAAAACGTGGTTGGTGTGTGCTTTGTAGCTCATGATCTTACAGGACAGAAGACTGTGATGGACAAGTTCACTCGCATCGAAGGTGATTACAAGGCCATCATCCAGAATCCAAACCCTCTGATCCCTCCCATATTTGGCACCGACGAGTTCGGGTGGTGCACGGAGTGGAATCCAGCGATGTCAAAGCTAACAGGTCTGAAGCGAGAGGAAGTGATGGACAAGATGCTGCTAGGAGAAGTCTTTGGGACGCAGAAGTCGTGTTGCCGTCTGAAGAATCAAGAAGCGTTTGTGAACCTTGGGATCGTGCTGAACAACGCTGTGACTAGCCAGGAGGCGGAGAAAGTGCCATTTGCTTTTTTTACGAGAGGTGGAAAGTATGTGGAGTGTCTGCTGTGTGTGAGTAAGAAGCTAGACAGGGAAGGTGTGGTGACAGGAGTCTTCTGTTTCCTGCAGCTTGCTAGCCATGAGCTGCAGCAAGCTCTTCATGTTCAGCGTCTAGCTGAGCGGACCGCGTTGAAGAGGTTAAAGGCCTTAGCTTACATTAAAAGACAGATCAGGAATCCGCTGTCCGGTATCATGTTCACAAGGAAAATGATGGAAGTGTCTGAGTTAGGACCAGAGCAGAGAAGGATTCTGCAAACTAGCGCTTTGTGTCAGAAGCAGCTCAGCAAGATCCTGGATGACTCTGATCTCGAAAGCATCATTGAAGGGTGTTTGGATCTTGAGATGAAAGAGTTCAGCTTAAACGAAGTGTTGACTGCTTCCACAAGTCAAGTGATGATGAAGAGTAACGGAAAGAGCGTTAGGATAACAAATGATACAGGAGAAGAAGTGATGTCTGATACTTTGTATGGAGACAGTATCAGGCTTCAGCAAGTCTTGGCGGATTTCATGCTGATGTCTGTTAACTTTACACCATCCGGAGGAGAGCTGACTGTTACAGCTTCACTGAGGAAAGATCAGCTTGGAAGATCTGTGCATCTTGCTTATTTGGAGATCAGAATAACGCATACAGGAGCTGGGTTACCAGAGTTTTTGCTAAACCAAATGTTTGGAACTGAGGAAGATATGTCGGAGGAAGGACTAAGCTTGATGGTTAGCCGGAAACTTGTGAAGCTGATGAATGGAGATGTTCAGTACTTGAGACAAGCTGGGAAATCGAGTTTTATCATCACTGCAGAACTCGCTGCAGCAAACAAGTAG
Protein:  
MSGSRPSHSSEGSRRSRHSARIIAQTTVDAKLHADFEESGSCFDYSTSVRVTGPVVENQPPRSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAAELLTMASHAVPSVGEQGALGIGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSAKPFYAIVHRVTGSIIVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVTVLQDEKLSSDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAAAPDSTAPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSEFHLQEIASWLCEYHTDSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGEATDVNTKIIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKISELTGLPVDEAIGKHLLTLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRDLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTEWNPAMSKLTGLKREEVMDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQEAEKVPFAFFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRLKALAYIKRQIRNPLSGIMFTRKMMEVSELGPEQRRILQTSALCQKQLSKILDDSDLESIIEGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNDTGEEVMSDTLYGDSIRLQQVLADFMLMSVNFTPSGGELTVTASLRKDQLGRSVHLAYLEIRITHTGAGLPEFLLNQMFGTEEDMSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAELAAANK